Software Package for Transcription Factor Binding Site (TFBS) Analysis
I am looking for somebody, who can train me in using the Bioconductor R package with the name “TFBSTools”.
I would like to apply it to yeast data.
The URL to this package is http://bioconductor.org/packages/release/bioc/html/TFBSTools.html
The citation of this package is
Tan G and Lenhard B (2016). “TFBSTools: an R/Bioconductor package for transcription factor binding site analysis.” Bioinformatics, 32, pp. 1555-1556. doi: 10.1093/bioinformatics/btw024,http://bioinformatics.oxfordjournals.org/content/32/10/1555.
TY - JOUR
T1 - TFBSTools: an R/bioconductor package for transcription factor binding site analysis
AU - Tan, Ge
AU - Lenhard, Boris
Y1 - 2016/05/15
N1 - 10.1093/bioinformatics/btw024
JO - Bioinformatics
SP - 1555
EP - 1556
VL - 32
IS - 10
N2 - Summary : The ability to efficiently investigate transcription factor binding sites (TFBSs) genome-wide is central to computational studies of gene regulation. TFBSTools is an R/Bioconductor package for the analysis and manipulation of TFBSs and their associated transcription factor profile matrices. TFBStools provides a toolkit for handling TFBS profile matrices, scanning sequences and alignments including whole genomes, and querying the JASPAR database. The functionality of the package can be easily extended to include advanced statistical analysis, data visualization and data integration. Availability and implementation : The package is implemented in R and available under GPL-2 license from the Bioconductor website ( http://bioconductor.org/packages/TFBSTools/ ). Contact:ge.tan09@imperial.ac.ukSupplementary information: are available at Bioinformatics online.
SN - 1367-4803
M3 - doi: 10.1093/bioinformatics/btw024
UR - http://dx.doi.org/10.1093/bioinformatics/btw024 ... Show more